A ball appears ontop of the character instead of being half underground half over ground?

Basically I have made a script which makes a ball appear and expand when a player presses Q. When I included a damage script, the balls goes ontop of the player.

GIF of being broken: https://gyazo.com/c53b781adf9c40d213f47883df504937

GIF of working: https://gyazo.com/c53b781adf9c40d213f47883df504937

Heres the entire code:

plr = game.Players.LocalPlayer
Enabled = script.Parent.Parent:WaitForChild("Available")
En = true
UserInput = game:GetService("UserInputService")
Mouse = plr:GetMouse()
runSerive = game:GetService("RunService")
Skills = {"EarthBlock1","EarthBlock2","EarthBlock3","Fire"}
UserInput.InputBegan:connect(function(Input,gameProcessed)
    if Input.KeyCode == Enum.KeyCode.Q then--and Enabled.Value == true --and En == true and plr:WaitForChild("Data").Level.Value >= 5 and plr.Data.Element.Value == "Earth" and gameProcessed == false then En = false
 Enabled.Value = false
--plr.Character.Humanoid.WalkSpeed = 0

local animTrack = plr.Character.Humanoid:LoadAnimation(script.Animation1)
        animTrack:Play()


for i = 1,5 do
    local x = Instance.new("Part")



    local Ring = script:WaitForChild("Ring"):Clone()
    Ring.Parent = game.Workspace
    Ring.CFrame = plr.Character.LowerTorso.CFrame * CFrame.new(0,-1,0) * CFrame.Angles(math.random(-360,360),0,math.random(-360,360))
    Ring.CanCollide = false
    Ring.Anchored = true

    local Ring2 = script:WaitForChild("Ring"):Clone()
    Ring2.Parent = game.Workspace
    Ring2.Mesh.Scale = Vector3.new(2,2,2)
    Ring2.CFrame = plr.Character.LowerTorso.CFrame * CFrame.new(0,-1,0) * CFrame.Angles(math.random(-360,360),0,math.random(-360,360))
    Ring2.CanCollide = false
    Ring2.Anchored = true

    x.CanCollide = false
    x.Anchored = true
    x.Size = Vector3.new(1,1,1)
    x.CFrame = plr.Character.LowerTorso.CFrame - Vector3.new(0,3,0)
    x.Transparency = 0.1
    x.TopSurface = "Smooth"
    x.BottomSurface = "Smooth"
    x.BrickColor = BrickColor.new("Ghost grey")
    local mesh = Instance.new("SpecialMesh",x)
    mesh.MeshType = Enum.MeshType.Sphere
x.Parent = game.Workspace
AlreadyHit = false

x.Touched:connect(function(Hit)
print(Hit.Name)
if Hit.Parent:FindFirstChild("Humanoid") and Hit.Parent.Name ~= plr.Name and AlreadyHit == false then print("2")
AlreadyHit = true
Hit.Parent:FindFirstChild("Humanoid"):TakeDamage(20)
elseif Hit.Parent:FindFirstChild("Humanoid") ~= true then print("3")
for i = 1,table.getn(Skills) do
if Hit.Name == Skills[i] then
Hit.BodyVelocity.Velocity = Hit.BodyVelocity.Velocity + Vector3.new(180,0,0)
print("4")
end
end
end
    end)
    for i = 1,20 do
    game:GetService("RunService").Heartbeat:wait()
        Ring.Mesh.Scale = Ring.Mesh.Scale + Vector3.new(2,2,2)
        Ring.Transparency = Ring.Transparency + 0.025
        Ring2.Mesh.Scale = Ring.Mesh.Scale + Vector3.new(2,2,2)
        Ring2.Transparency = Ring2.Transparency + 0.025
        x.Size = x.Size + Vector3.new(2,2,2)
        x.Transparency = x.Transparency + 0.025


    end






    Ring:Destroy()
    Ring2:Destroy()

    x:Destroy()


    end
    end
end)

When I add this section in the code breaks

AlreadyHit = false

x.Touched:connect(function(Hit)
print(Hit.Name)
if Hit.Parent:FindFirstChild("Humanoid") and Hit.Parent.Name ~= plr.Name and AlreadyHit == false then print("2")
AlreadyHit = true
Hit.Parent:FindFirstChild("Humanoid"):TakeDamage(2 + plr.Data.BendingLevel.Value/10)
elseif Hit.Parent:FindFirstChild("Humanoid") ~= true then print("3")
for i = 1,table.getn(Skills) do
if Hit.Name == Skills[i] then
Hit.BodyVelocity.Velocity = Hit.BodyVelocity.Velocity + Vector3.new(180,0,0)
print("4")
end
end
end
    end)

I've got no clue why. I've spent hours and hours on this but I've got no clue.