What I mean by this is I want to make a game with levels and those levels are on different game place ids, but not have that level showing up if you look on continue playing or search it. Is there a possible way of doing this?
It's not possible with places in different Universes but places in same universe will be showing as the main place they are parented to, Universe in roblox is not a place but the universe where all the places of same game are, You add places to the universe by clicking in Studio View
> GameExplorer
> Places
and create new place, copy it's id and done, you've got place in same universe.